| Name | What | Region | Country | Lat | Long | Elev ft. | Pop est |
|---|---|---|---|---|---|---|---|
| Saji-shinden | city | Shiga | Japan | 34.93 | 136.24 | 830 | 33063 |
| Sakamoto | city | Shiga | Japan | 35.07 | 135.87 | 314 | 141868 |
| Sakodo | city | Shiga | Japan | 34.98 | 136.13 | 830 | 60899 |
| Sato | city | Shiga | Japan | 34.93 | 135.93 | 830 | 94094 |
| Sekinotsu | city | Shiga | Japan | 34.93 | 135.92 | 357 | 93685 |
| Seta | city | Shiga | Japan | 34.98 | 135.91 | 305 | 156926 |
| Seta-cho | city | Shiga | Japan | 34.98 | 135.91 | 305 | 156926 |
| Shibahara | city | Shiga | Japan | 34.96 | 135.95 | 321 | 123880 |
| Shigarakicho-chokushi | city | Shiga | Japan | 34.89 | 136.07 | 977 | 8887 |
| Shigarakicho-hata | city | Shiga | Japan | 34.89 | 136.00 | 1669 | 8549 |
| Shigarakicho-koyama | city | Shiga | Japan | 34.86 | 136.06 | 1122 | 8817 |
| Shigarakicho-nakano | city | Shiga | Japan | 34.86 | 136.02 | 1128 | 8975 |
| Shigarakicho-ogawa | city | Shiga | Japan | 34.85 | 136.03 | 1669 | 9027 |
| Shigarakicho-sugiyama | city | Shiga | Japan | 34.85 | 136.01 | 1669 | 8774 |
| Shigarakichō-eda | city | Shiga | Japan | 34.87 | 136.05 | 984 | 9051 |
| Shigarakichō-hosohara | city | Shiga | Japan | 34.86 | 136.03 | 1020 | 9067 |
| Shigarakichō-kinose | city | Shiga | Japan | 34.92 | 136.08 | 882 | 11256 |
| Shigarakichō-maki | city | Shiga | Japan | 34.91 | 136.08 | 938 | 8871 |
| Shigarakichō-miyajiri | city | Shiga | Japan | 34.87 | 135.97 | 984 | 8245 |
| Shigarakichō-miyamachi | city | Shiga | Japan | 34.93 | 136.08 | 1010 | 16411 |
| Shigarakichō-nagano | city | Shiga | Japan | 34.88 | 136.05 | 984 | 9028 |
| Shigarakichō-ogawade | city | Shiga | Japan | 34.86 | 136.04 | 1138 | 9078 |
| Shigarakichō-tashiro | city | Shiga | Japan | 34.91 | 136.02 | 1669 | 8475 |
| Shimo-sakamoto | city | Shiga | Japan | 35.05 | 135.88 | 246 | 146768 |
| Shimo-sakimoto | city | Shiga | Japan | 35.05 | 135.88 | 246 | 146768 |
| Shimo-toyoura | city | Shiga | Japan | 35.15 | 136.13 | 318 | 73863 |
| Shimoda | city | Shiga | Japan | 35.02 | 136.13 | 830 | 58228 |
| Shimokomazuki | city | Shiga | Japan | 34.98 | 136.23 | 889 | 40496 |
| Shinden | city | Shiga | Japan | 34.90 | 136.13 | 984 | 21693 |
| Shinhamachō | city | Shiga | Japan | 35.00 | 135.92 | 308 | 157721 |
| Shinme | city | Shiga | Japan | 34.95 | 135.95 | 830 | 91587 |
| Shiotsu-hama | city | Shiga | Japan | 35.52 | 136.17 | 328 | 8659 |
| Shunjo | city | Shiga | Japan | 35.38 | 136.38 | 830 | 24077 |
| Shunshō | city | Shiga | Japan | 35.38 | 136.38 | 830 | 24077 |
| Sueda | city | Shiga | Japan | 34.97 | 136.23 | 830 | 40458 |
| Sugimoto | city | Shiga | Japan | 34.89 | 136.25 | 961 | 16917 |
| Suijo | city | Shiga | Japan | 35.38 | 136.38 | 830 | 24077 |
| Susatsu | city | Shiga | Japan | 35.02 | 135.97 | 318 | 162051 |