| Name | What | Region | Country | Lat | Long | Elev Ft. | Pop Est |
| Yabu | city | Hyogo-ken | Japan | 35.3833333 | 134.8166667 | 656 | 79020 |
| Yabu-ichiba | city | Hyogo-ken | Japan | 35.3833333 | 134.8166667 | 656 | 79020 |
| Yabutani | city | Hyogo-ken | Japan | 34.8 | 134.4666667 | 3 | 70367 |
| Yagami-shin | city | Hyogo-ken | Japan | 35.0666667 | 135.2833333 | 918 | 79343 |
| Yagi | city | Hyogo-ken | Japan | 34.7666667 | 134.7333333 | 0 | 40757 |
| Yaka | city | Hyogo-ken | Japan | 34.7833333 | 134.7333333 | 200 | 40757 |
| Yakami-shin | city | Hyogo-ken | Japan | 35.0666667 | 135.2833333 | 918 | 79343 |
| Yakomi-shin | city | Hyogo-ken | Japan | 35.0666667 | 135.2833333 | 918 | 79343 |
| Yamaguchi | city | Hyogo-ken | Japan | 35.2166667 | 134.8 | 984 | 79184 |
| Yamasaki | city | Hyogo-ken | Japan | 35 | 134.55 | 321 | 79426 |
| Yamashita | city | Hyogo-ken | Japan | 34.9 | 135.4 | 321 | 191109 |
| Yamashitamachi | city | Hyogo-ken | Japan | 34.9 | 135.4 | 321 | 191109 |
| Yanase | city | Hyogo-ken | Japan | 35.3166667 | 134.8833333 | 351 | 77813 |
| Yashiro | city | Hyogo-ken | Japan | 34.9166667 | 134.9666667 | 249 | 79465 |
| Yoka | city | Hyogo-ken | Japan | 35.4 | 134.7666667 | 390 | 79020 |
| Yokamachi | city | Hyogo-ken | Japan | 35.4 | 134.7666667 | 390 | 79020 |
| Yokoo | city | Hyogo-ken | Japan | 34.8166667 | 134.4 | 318 | 78350 |
| Yoshimi | city | Hyogo-ken | Japan | 34.7833333 | 134.6 | 3 | 36871 |
| Yu | city | Hyogo-ken | Japan | 35.55 | 134.4833333 | 380 | 77049 |
| Yubi | city | Hyogo-ken | Japan | 34.25 | 134.6833333 | 3 | 29761 |
| Yumura | city | Hyogo-ken | Japan | 35.55 | 134.4833333 | 380 | 77049 |
| Yura | city | Hyogo-ken | Japan | 34.2833333 | 134.95 | 0 | 31988 |
| Yōka | city | Hyogo-ken | Japan | 35.4 | 134.7666667 | 390 | 79020 |
| Yōkamachi | city | Hyogo-ken | Japan | 35.4 | 134.7666667 | 390 | 79020 |
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