| Name | What | Region | Country | Lat | Long | Elev Ft. | Pop Est |
| Muda | city | Hiiumaa | Estonia | 58.7736111 | 22.6380556 | 45 | 857 |
| Mudaste | city | Hiiumaa | Estonia | 59.0241667 | 22.5611111 | 29 | 604 |
| Mudiste | city | Viljandimaa | Estonia | 58.5058333 | 25.5813889 | 324 | 1601 |
| Muga | city | Harjumaa | Estonia | 59.4819444 | 24.9294444 | 82 | 7133 |
| Muga Noevere | city | Laane-Virumaa | Estonia | 59.1 | 26.6166667 | 285 | 1670 |
| Muga-Kyurme | city | Laane-Virumaa | Estonia | 59.0819444 | 26.6138889 | 301 | 1671 |
| Mugra | city | Polvamaa | Estonia | 58.0236111 | 26.7011111 | 465 | 1317 |
| Muhkametsa | city | Vorumaa | Estonia | 57.73 | 26.86 | 423 | 1568 |
| Muhkva | city | Valgamaa | Estonia | 57.8641667 | 26.29 | 95 | 1582 |
| Muhu | city | Saaremaa | Estonia | 58.6019444 | 23.2469444 | 68 | 1039 |
| Mui | city | Saaremaa | Estonia | 58.5133333 | 23.1130556 | 9 | 893 |
| Muike | city | Laane-Virumaa | Estonia | 59.5191667 | 25.9127778 | 203 | 1647 |
| Muikula | city | Saaremaa | Estonia | 58.5133333 | 23.1130556 | 9 | 893 |
| Muiküla | city | Saaremaa | Estonia | 58.5133333 | 23.1130556 | 9 | 893 |
| Mujaste | city | Saaremaa | Estonia | 58.5830556 | 22.7791667 | 13 | 924 |
| Mukre | city | Raplamaa | Estonia | 58.72 | 25.0322222 | 167 | 1237 |
| Mukri | city | Raplamaa | Estonia | 58.72 | 25.0322222 | 167 | 1237 |
| Muksi | city | Harjumaa | Estonia | 59.5011111 | 25.5283333 | 157 | 6292 |
| Muksi | city | Viljandimaa | Estonia | 58.1569444 | 25.7269444 | 377 | 1618 |
| Mulgi | city | Viljandimaa | Estonia | 58.2347222 | 25.3322222 | 239 | 1609 |
| Mullavere | city | Jogevamaa | Estonia | 58.6013889 | 26.5666667 | 259 | 1265 |
| Mullutu | city | Saaremaa | Estonia | 58.2769444 | 22.3991667 | 9 | 1000 |
| Mullutu Asundus | city | Saaremaa | Estonia | 58.2769444 | 22.3991667 | 9 | 1000 |
| Mullutu-Parila | city | Saaremaa | Estonia | 58.2769444 | 22.3991667 | 9 | 1000 |
| Munalaskme | city | Harjumaa | Estonia | 59.1897222 | 24.2633333 | 144 | 9839 |
| Mundi | city | Jarvamaa | Estonia | 58.8688889 | 25.5897222 | 226 | 1307 |
| Munsi | city | Viljandimaa | Estonia | 58.4969444 | 25.4755556 | 328 | 1604 |
| Muraja | city | Saaremaa | Estonia | 58.465 | 23.2291667 | 13 | 544 |
| Muraka | city | Parnumaa | Estonia | 58.5122222 | 24.8491667 | 65 | 1526 |
| Muraski | city | Vorumaa | Estonia | 57.5672222 | 27.2777778 | 547 | 1382 |
| Muraste | city | Harjumaa | Estonia | 59.4572222 | 24.4308333 | 160 | 7817 |
| Murati | city | Vorumaa | Estonia | 57.5919444 | 27.0647222 | 561 | 1364 |
| Muratsi | city | Saaremaa | Estonia | 58.2361111 | 22.5761111 | 0 | 515 |
| Muraya | city | Saaremaa | Estonia | 58.465 | 23.2291667 | 13 | 544 |
| Murgi | city | Valgamaa | Estonia | 57.7919444 | 26.2366667 | 177 | 1582 |
| Muri | city | Viljandimaa | Estonia | 58.1869444 | 25.6144444 | 344 | 1615 |
| Muri | city | Tartumaa | Estonia | 58.3919444 | 26.825 | 216 | 4075 |
| Murika | city | Saaremaa | Estonia | 58.6097222 | 22.5505556 | 6 | 703 |
| Murikatsi | city | Viljandimaa | Estonia | 58.1166667 | 25.8333333 | 351 | 1602 |
| Muriku | city | Jarvamaa | Estonia | 58.65 | 25.4666667 | 213 | 1395 |
| Muriste | city | Parnumaa | Estonia | 58.5338889 | 23.6330556 | 13 | 589 |
| Murru | city | Parnumaa | Estonia | 58.3958333 | 24.0688889 | 88 | 1531 |
| Murru | city | Parnumaa | Estonia | 58.2913889 | 24.0894444 | 45 | 1076 |
| Murru | city | Parnumaa | Estonia | 58.5444444 | 24.7663889 | 68 | 1526 |
| Murru | city | Viljandimaa | Estonia | 58.15 | 25.8333333 | 288 | 1614 |
| Murru | city | Jogevamaa | Estonia | 58.7872222 | 26.9291667 | 82 | 1153 |
| Murru-Metsa | city | Parnumaa | Estonia | 58.3833333 | 24.0166667 | 78 | 1531 |
| Murruste | city | Parnumaa | Estonia | 58.2913889 | 24.0894444 | 45 | 1076 |
| Must'yala | city | Saaremaa | Estonia | 58.4613889 | 22.2416667 | 91 | 868 |
| Musta | city | Viljandimaa | Estonia | 58.1833333 | 25.5833333 | 337 | 1615 |
| Mustahamba | city | Vorumaa | Estonia | 57.7597222 | 26.8847222 | 492 | 1565 |
| Mustajoe | city | Polvamaa | Estonia | 57.9727778 | 26.9644444 | 291 | 1334 |
| Mustajoe | city | Ida-Virumaa | Estonia | 59.2666667 | 27.8833333 | 108 | 3843 |
| Mustajõe | city | Polvamaa | Estonia | 57.9727778 | 26.9644444 | 291 | 1334 |
| Mustajõe | city | Ida-Virumaa | Estonia | 59.2666667 | 27.8833333 | 108 | 3843 |
| Mustakese | city | Valgamaa | Estonia | 57.9 | 26.1833333 | 154 | 1579 |
| Mustakurmu | city | Polvamaa | Estonia | 58.1838889 | 27.05 | 193 | 1421 |
| Mustakurnu | city | Polvamaa | Estonia | 58.1838889 | 27.05 | 193 | 1421 |
| Mustamae | city | Harjumaa | Estonia | 59.4025 | 24.6761111 | 127 | 9127 |
| Mustametsa | city | Harjumaa | Estonia | 59.465 | 25.5705556 | 150 | 9294 |
| Mustametsa | city | Tartumaa | Estonia | 58.5630556 | 26.8513889 | 213 | 3536 |
| Mustamäe | city | Harjumaa | Estonia | 59.4025 | 24.6761111 | 127 | 9127 |
| Mustanina | city | Ida-Virumaa | Estonia | 59.3480556 | 27.7188889 | 91 | 4558 |
| Mustapali | city | Viljandimaa | Estonia | 58.2941667 | 25.7727778 | 219 | 1611 |
| Mustaru | city | Parnumaa | Estonia | 58.6058333 | 25.07 | 108 | 1523 |
| Mustayye | city | Ida-Virumaa | Estonia | 59.2666667 | 27.8833333 | 108 | 3843 |
| Mustel | city | Saaremaa | Estonia | 58.4613889 | 22.2416667 | 91 | 868 |
| Mustel | city | Viljandimaa | Estonia | 58.2333333 | 25.8666667 | 229 | 1615 |
| Mustivere | city | Viljandimaa | Estonia | 58.3941667 | 25.5086111 | 334 | 1610 |
| Mustja | city | Vorumaa | Estonia | 57.9105556 | 26.85 | 278 | 1504 |
| Mustjala | city | Saaremaa | Estonia | 58.4613889 | 22.2416667 | 91 | 868 |
| Mustjoe | city | Harjumaa | Estonia | 59.285 | 25.535 | 219 | 7216 |
| Mustjula | city | Saaremaa | Estonia | 58.4613889 | 22.2416667 | 91 | 868 |
| Mustjõe | city | Harjumaa | Estonia | 59.285 | 25.535 | 219 | 7216 |
| Mustla | city | Saaremaa | Estonia | 58.4613889 | 22.2416667 | 91 | 868 |
| Mustla | city | Saaremaa | Estonia | 58.3608333 | 22.6252778 | 36 | 1097 |
| Mustla | city | Saaremaa | Estonia | 58.4327778 | 23.0458333 | 19 | 918 |
| Mustla | city | Parnumaa | Estonia | 58.1341667 | 25.1002778 | 232 | 1565 |
| Mustla | city | Jarvamaa | Estonia | 59.0608333 | 25.4344444 | 252 | 4370 |
| Mustla | city | Viljandimaa | Estonia | 58.2333333 | 25.8666667 | 229 | 1615 |
| Mustlakula | city | Parnumaa | Estonia | 58.1341667 | 25.1002778 | 232 | 1565 |
| Mustlakyula | city | Parnumaa | Estonia | 58.1341667 | 25.1002778 | 232 | 1565 |
| Mustlaküla | city | Parnumaa | Estonia | 58.1341667 | 25.1002778 | 232 | 1565 |
| Mustmatta | city | Ida-Virumaa | Estonia | 59.3963889 | 27.0683333 | 164 | 4016 |
| Mustmätta | city | Ida-Virumaa | Estonia | 59.3963889 | 27.0683333 | 164 | 4016 |
| Mustoja | city | Laane-Virumaa | Estonia | 59.58 | 26.1502778 | 36 | 1249 |
| Mustoya | city | Laane-Virumaa | Estonia | 59.58 | 26.1502778 | 36 | 1249 |
| Mustu | city | Harjumaa | Estonia | 59.1002778 | 24.3869444 | 203 | 7187 |
| Mustumetsa | city | Valgamaa | Estonia | 57.9758333 | 26.1191667 | 259 | 1571 |
| Mustve | city | Jogevamaa | Estonia | 58.8486111 | 26.9397222 | 55 | 1775 |
| Mustvee | city | Jogevamaa | Estonia | 58.8486111 | 26.9397222 | 55 | 1775 |
| Mustwee | city | Jogevamaa | Estonia | 58.8486111 | 26.9397222 | 55 | 1775 |
| Mustʼyala | city | Saaremaa | Estonia | 58.4613889 | 22.2416667 | 91 | 868 |
| Muta | city | Jogevamaa | Estonia | 58.8661111 | 26.7013889 | 190 | 1310 |
| Mutemetsa | city | Vorumaa | Estonia | 57.6094444 | 26.7569444 | 367 | 1414 |
| Muti | city | Parnumaa | Estonia | 58.5366667 | 24.8288889 | 62 | 1526 |
| Muuga | city | Harjumaa | Estonia | 59.4819444 | 24.9294444 | 82 | 7133 |
| Muuga | city | Laane-Virumaa | Estonia | 59.1052778 | 26.6158333 | 311 | 1670 |
| Muuga Asundus | city | Laane-Virumaa | Estonia | 59.1052778 | 26.6158333 | 311 | 1670 |
| Muuga-Kurme | city | Laane-Virumaa | Estonia | 59.0819444 | 26.6138889 | 301 | 1671 |
| Muuga-Noavere | city | Laane-Virumaa | Estonia | 59.1 | 26.6166667 | 285 | 1670 |
| Muuksi | city | Harjumaa | Estonia | 59.5011111 | 25.5283333 | 157 | 6292 |
| Muuriku | city | Laane-Virumaa | Estonia | 59.1288889 | 26.2861111 | 390 | 1667 |
| Muurisepa | city | Jogevamaa | Estonia | 58.6166667 | 26.5 | 206 | 1265 |
| Muursepa | city | Jogevamaa | Estonia | 58.6166667 | 26.5 | 206 | 1265 |
| Muusi-Arukula | city | Laanemaa | Estonia | 58.6913889 | 24.0525 | 22 | 1249 |
| Muusi-Aruküla | city | Laanemaa | Estonia | 58.6913889 | 24.0525 | 22 | 1249 |
| Muusika | city | Harjumaa | Estonia | 59.2166667 | 24.4705556 | 170 | 9828 |
| Muusleri | city | Jarvamaa | Estonia | 58.9216667 | 25.9025 | 291 | 1306 |
| Muusleri Asundus | city | Jarvamaa | Estonia | 58.9216667 | 25.9025 | 291 | 1306 |
| Muyaste | city | Saaremaa | Estonia | 58.5830556 | 22.7791667 | 13 | 924 |
| Muyke | city | Laane-Virumaa | Estonia | 59.5191667 | 25.9127778 | 203 | 1647 |
| Muykyula | city | Saaremaa | Estonia | 58.5133333 | 23.1130556 | 9 | 893 |
| Muzi-Arukyula | city | Laanemaa | Estonia | 58.6913889 | 24.0525 | 22 | 1249 |
| Muzika | city | Harjumaa | Estonia | 59.2166667 | 24.4705556 | 170 | 9828 |
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