| Name | What | Region | Country | Lat | Long | Elev Ft. | Pop Est |
| Lyaaniste | city | Tartumaa | Estonia | 58.2622222 | 27.1352778 | 121 | 3377 |
| Lyaekyulya | city | Harjumaa | Estonia | 59.3369444 | 25.2266667 | 180 | 9791 |
| Lyaeniste | city | Tartumaa | Estonia | 58.2622222 | 27.1352778 | 121 | 3377 |
| Lyagi | city | Saaremaa | Estonia | 58.3938889 | 22.0511111 | 82 | 974 |
| Lyailaste | city | Parnumaa | Estonia | 58.45 | 23.9833333 | 59 | 1530 |
| Lyakhkma | city | Parnumaa | Estonia | 58.2622222 | 24.8161111 | 78 | 1537 |
| Lyakhtru | city | Laanemaa | Estonia | 58.9161111 | 23.8886111 | 68 | 1069 |
| Lyanekyula | city | Harjumaa | Estonia | 59.55 | 24.5333333 | 82 | 2513 |
| Lyanga | city | Saaremaa | Estonia | 58.1858333 | 22.2111111 | 49 | 895 |
| Lyapi | city | Jarvamaa | Estonia | 59.2466667 | 25.7425 | 291 | 1757 |
| Lyasna | city | Laane-Virumaa | Estonia | 59.4327778 | 25.9055556 | 275 | 3640 |
| Lyati | city | Raplamaa | Estonia | 58.7588889 | 24.2222222 | 49 | 1055 |
| Lyatiniidi | city | Saaremaa | Estonia | 58.4691667 | 22.0194444 | 78 | 605 |
| Lyba | city | Parnumaa | Estonia | 58.3141667 | 24.0297222 | 36 | 964 |
| Lyetsa | city | Saaremaa | Estonia | 58.6369444 | 23.3388889 | 52 | 408 |
| Lyla | city | Jarvamaa | Estonia | 58.9369444 | 25.3769444 | 242 | 1317 |
| Lymmala | city | Saaremaa | Estonia | 58.1827778 | 22.1461111 | 59 | 795 |
| Lymmelu | city | Raplamaa | Estonia | 58.7805556 | 25.1988889 | 209 | 1153 |
| Lyne | city | Saaremaa | Estonia | 58.4158333 | 22.7541667 | 32 | 1097 |
| Lyo | city | Saaremaa | Estonia | 58.0880556 | 22.1913889 | 29 | 641 |
| Lyo | city | Parnumaa | Estonia | 58.6966667 | 24.7941667 | 157 | 1474 |
| Lyo | city | Jarvamaa | Estonia | 58.9166667 | 25.7166667 | 262 | 1306 |
| Lyopyllu | city | Saaremaa | Estonia | 58.0483333 | 22.1330556 | 19 | 767 |
| Lype | city | Hiiumaa | Estonia | 58.9669444 | 22.8225 | 36 | 651 |
| Lypemetsa | city | Raplamaa | Estonia | 58.9255556 | 24.6052778 | 154 | 1050 |
| Lypi | city | Saaremaa | Estonia | 58.4752778 | 22.7408333 | 55 | 1097 |
| Lyppe | city | Parnumaa | Estonia | 58.5688889 | 23.9936111 | 55 | 1526 |
| Lypplane | city | Parnumaa | Estonia | 58.4861111 | 24.6505556 | 55 | 1527 |
| Lysovka | city | Polvamaa | Estonia | 58.0783333 | 27.5452778 | 98 | 899 |
| Lyubiya | city | Harjumaa | Estonia | 59.5158333 | 24.8505556 | 141 | 6421 |
| Lyubnitsa | city | Polvamaa | Estonia | 58.0563889 | 27.5988889 | 55 | 540 |
| Lyuganuse | city | Ida-Virumaa | Estonia | 59.3805556 | 27.0302778 | 141 | 4026 |
| Lyukati | city | Harjumaa | Estonia | 59.2716667 | 25.2794444 | 223 | 9815 |
| Lyulle | city | Saaremaa | Estonia | 57.9608333 | 22.0608333 | 13 | 915 |
| Lyumanda | city | Saaremaa | Estonia | 58.2844444 | 22.0391667 | 75 | 934 |
| Lyumandu | city | Raplamaa | Estonia | 59.038889 | 24.3866667 | 160 | 1510 |
| Lyumandu | city | Raplamaa | Estonia | 59.165 | 24.5841667 | 232 | 2867 |
| Lyumatu | city | Ida-Virumaa | Estonia | 59.2533333 | 26.9855556 | 193 | 4687 |
| Lyumatu | city | Jogevamaa | Estonia | 58.7105556 | 27.0666667 | 200 | 1083 |
| Lyunakyula | city | Harjumaa | Estonia | 59.55 | 24.5333333 | 82 | 2513 |
| Lyunakyulya | city | Harjumaa | Estonia | 59.55 | 24.5333333 | 82 | 2513 |
| Lyuta | city | Laane-Virumaa | Estonia | 59.3833333 | 26.465 | 239 | 1656 |
| Lyuyste | city | Parnumaa | Estonia | 58.6333333 | 25.15 | 121 | 1520 |
| Lyve | city | Valgamaa | Estonia | 58.0625 | 25.8702778 | 318 | 1579 |
| Lyymetsa | city | Jarvamaa | Estonia | 58.7794444 | 25.7527778 | 226 | 1312 |
| Lyyuze | city | Raplamaa | Estonia | 59.1233333 | 24.8855556 | 272 | 1165 |
| Lyyuze | city | Raplamaa | Estonia | 59.1333333 | 24.9 | 285 | 2155 |
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