| Name | What | Region | Country | Lat | Long | Elev Ft. | Pop Est |
| Hedemeste | city | Parnumaa | Estonia | 58.0813889 | 24.5102778 | 45 | 1425 |
| Hedemēste | city | Parnumaa | Estonia | 58.0813889 | 24.5102778 | 45 | 1425 |
| Heibri | city | Vorumaa | Estonia | 57.6991667 | 26.9177778 | 511 | 1549 |
| Heigi | city | Hiiumaa | Estonia | 58.9669444 | 22.5577778 | 32 | 824 |
| Heilu | city | Hiiumaa | Estonia | 59 | 22.8 | 9 | 651 |
| Heimtali | city | Viljandimaa | Estonia | 59.0833333 | 25.5 | 255 | 1515 |
| Heimtali | city | Viljandimaa | Estonia | 58.3211111 | 25.5063889 | 249 | 1611 |
| Heinamaa | city | Harjumaa | Estonia | 59.55 | 24.5333333 | 82 | 2513 |
| Heinasoo | city | Vorumaa | Estonia | 57.6930556 | 27.2752778 | 620 | 1568 |
| Heinassoo | city | Vorumaa | Estonia | 57.6930556 | 27.2752778 | 620 | 1568 |
| Heisri | city | Polvamaa | Estonia | 58.0277778 | 26.7872222 | 472 | 1317 |
| Heiste | city | Hiiumaa | Estonia | 58.92 | 22.5358333 | 65 | 867 |
| Heistesoo | city | Hiiumaa | Estonia | 58.9322222 | 22.2872222 | 26 | 415 |
| Helbi | city | Polvamaa | Estonia | 57.9666667 | 27.5 | 134 | 1320 |
| Helbi | city | Vorumaa | Estonia | 57.8011111 | 27.5127778 | 337 | 1627 |
| Helda | city | Raplamaa | Estonia | 59.0319444 | 24.9263889 | 265 | 1050 |
| Helenurme | city | Parnumaa | Estonia | 58.6363889 | 24.3547222 | 52 | 1379 |
| Hellama | city | Saaremaa | Estonia | 58.6094444 | 23.3216667 | 29 | 958 |
| Hellamaa | city | Hiiumaa | Estonia | 58.9352778 | 22.9475 | 3 | 589 |
| Hellamaa | city | Saaremaa | Estonia | 58.6094444 | 23.3216667 | 29 | 958 |
| Hellekunnu | city | Vorumaa | Estonia | 57.8297222 | 27.2794444 | 314 | 1537 |
| Hellenurme | city | Valgamaa | Estonia | 58.1361111 | 26.39 | 298 | 2672 |
| Helme | city | Valgamaa | Estonia | 58.0119444 | 25.8972222 | 242 | 1573 |
| Helmet | city | Valgamaa | Estonia | 58.0119444 | 25.8972222 | 242 | 1573 |
| Helmkula | city | Parnumaa | Estonia | 58.4508333 | 23.7502778 | 39 | 1505 |
| Helmküla | city | Parnumaa | Estonia | 58.4508333 | 23.7502778 | 39 | 1505 |
| Helmut | city | Valgamaa | Estonia | 58.027778 | 25.935 | 229 | 1573 |
| Heltermaa | city | Hiiumaa | Estonia | 58.8669444 | 23.0438889 | 3 | 244 |
| Hendrikumoisa | city | Viljandimaa | Estonia | 58.2836111 | 25.5894444 | 278 | 1614 |
| Hendrikumõisa | city | Viljandimaa | Estonia | 58.2836111 | 25.5894444 | 278 | 1614 |
| Herjava | city | Laanemaa | Estonia | 58.9558333 | 23.6269444 | 32 | 919 |
| Herjave | city | Laanemaa | Estonia | 58.9558333 | 23.6269444 | 32 | 919 |
| Hertu | city | Raplamaa | Estonia | 58.9733333 | 24.8766667 | 239 | 1050 |
| Hetlamaa | city | Hiiumaa | Estonia | 58.9352778 | 22.9475 | 3 | 589 |
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