| Name | What | Region | Country | Lat | Long | Elev Ft. | Pop Est |
| Dejevo | city | Saaremaa | Estonia | 58.3911111 | 22.2227778 | 124 | 1097 |
| Derevnya Lakhkhosal' | city | Harjumaa | Estonia | 59.3941667 | 24.1975 | 0 | 2030 |
| Derevnya Lakhkhosalʼ | city | Harjumaa | Estonia | 59.3941667 | 24.1975 | 0 | 2030 |
| Derpt | city | Tartumaa | Estonia | 58.3661111 | 26.7361111 | 118 | 4081 |
| Dibi | city | Laanemaa | Estonia | 59.0205556 | 23.3075 | 29 | 495 |
| Diby | city | Laanemaa | Estonia | 59.0205556 | 23.3075 | 29 | 495 |
| Didrema | city | Parnumaa | Estonia | 58.5977778 | 23.9358333 | 62 | 1434 |
| Diibi | city | Laanemaa | Estonia | 59.0205556 | 23.3075 | 29 | 495 |
| Dirhami | city | Laanemaa | Estonia | 59.2 | 23.5 | 32 | 512 |
| Dorpat | city | Tartumaa | Estonia | 58.3661111 | 26.7361111 | 118 | 4081 |
| Dreimani | city | Parnumaa | Estonia | 57.9211111 | 24.3886111 | 32 | 915 |
| Dreimanni | city | Parnumaa | Estonia | 57.9211111 | 24.3886111 | 32 | 915 |
| Dreimansdorf | city | Parnumaa | Estonia | 57.9211111 | 24.3886111 | 32 | 915 |
| Dvor Keppo | city | Hiiumaa | Estonia | 58.9147222 | 22.2108333 | 85 | 440 |
| Dyby | city | Laanemaa | Estonia | 59.0205556 | 23.3075 | 29 | 495 |
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